strutture:cnaf:clusterhpc:installed_software
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| strutture:cnaf:clusterhpc:installed_software [2014/06/04 14:20] – [Compilers and mpi versions] dcesini@infn.it | strutture:cnaf:clusterhpc:installed_software [2014/06/04 14:21] (current) – [Compilers and mpi versions] dcesini@infn.it | ||
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| + | ====== Installed Software ===== | ||
| + | ==== Compilers and mpi versions ==== | ||
| + | |||
| + | Various version of C/C++, Fortran, CUDA compilers and python are available on all the nodes. \\ | ||
| + | To compile code on the nodes interactively, | ||
| + | < | ||
| + | bsub -q hpc_int -Is /bin/bash | ||
| + | </ | ||
| + | |||
| + | **PLEASE NOTE:** Although you can compile on the User Interface, as in any other node, it is a virtual machine and not suitable for compilation, | ||
| + | |||
| + | **By default the system compilers are:** | ||
| + | < | ||
| + | gcc --version | ||
| + | gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | ||
| + | gfortran --version | ||
| + | GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | ||
| + | </ | ||
| + | If you are ok with these versions you can use them directly. \\ | ||
| + | If you want to use a **different version** or the **CUDA compiler** or an **MPI library** you can use the Linux Environment Module tool that will set-up correctly the environment for the chosen version, i.e. you can try: | ||
| + | |||
| + | < | ||
| + | module avail | ||
| + | module load compilers/ | ||
| + | echo $PATH | ||
| + | echo $LD_LIBRARY_PATH | ||
| + | module list | ||
| + | module unload compilers/ | ||
| + | module list | ||
| + | echo $PATH | ||
| + | echo $LD_LIBRARY_PATH | ||
| + | </ | ||
| + | |||
| + | ==== Other Software Tools and Libraries Available on the Nodes==== | ||
| + | * gdb | ||
| + | * cmake | ||
| + | * boost && boost-devel | ||
| + | * hdf5 && hdf5-devel && hdf5-mpich2 && hdf5-mpich2-devel && hdf5-openmpi | ||
| + | * fftw && fftw-devel | ||
| + | * blas && blas-devel | ||
| + | * openblas && openblas-devel && openblas-openm && openblas-static && openblas-threads | ||
| + | * netcdf && netcdf-devel && netcdf4-python | ||
| + | * python-matplotlib | ||
| + | * ipython | ||
| + | * numpy-f2py | ||
| + | * scipy | ||
| + | * numpy | ||
| + | * scitools | ||
| + | * gnuplot | ||
| + | * gsl && gsl-devel | ||
| + | * paraview | ||
| + | |||
| + | ==== Requesting new Software on the Nodes ==== | ||
| + | To request new software on the nodes please write an email to: | ||
| + | < | ||
| + | hpc-support < | ||
| + | </ | ||